Ghanaian virus fusion glycoprotein (GhV F)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8tvb
Q-score: 0.56
Wang Z, McCallum M, Yan L, Gibson CA, Sharkey W, Park YJ, Dang HV, Amaya M, Person A, Broder CC, Veesler D
PNAS (2024) 121 pp. e2314990121-e2314990121 [ Pubmed: 38593070 DOI: doi:10.1073/pnas.2314990121 ]
- Prefusion ghanian henipavirus f fused to the i53-50a trimer via an intervening 16 gs linker (Complex from Henipavirus ghanaense)
- Fusion glycoprotein f0,2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (96 kDa, Protein from Thermotoga maritima MSB8)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
I3-01 in an expanded conformation
Heliyon (2022) 8 pp. e12280-e12280 [ DOI: doi:10.1016/j.heliyon.2022.e12280 Pubmed: 36590526 ]
Heliyon (2022) 8 pp. e12280-e12280 [ DOI: doi:10.1016/j.heliyon.2022.e12280 Pubmed: 36590526 ]
Structure of a nanoparticle with icosahedral symmetry
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8ed3
Q-score: 0.48
Heliyon (2022) 8 pp. e12280-e12280 [ DOI: doi:10.1016/j.heliyon.2022.e12280 Pubmed: 36590526 ]
- I3-01 (Complex from Thermotoga maritima MSB8)
- Designed i3-01 icosahedron (21 kDa, Protein from Thermotoga maritima MSB8)
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 7p5h
Q-score: 0.663
Furlan C, Chongdar N, Gupta P, Lubitz W, Ogata H, Blaza JN, Birrell JA
eLife (2022) 11 [ Pubmed: 36018003 DOI: doi:10.7554/eLife.79361 ]
- Fe-hydrogenase, subunit gamma (20 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
- Fe-hydrogenase, subunit alpha (72 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
- Iron/sulfur cluster (351 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Flavin mononucleotide (456 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Fe-hydrogenase, subunit beta (68 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
- Water (18 Da, Ligand)
- Tetrameric complex of hydabc protomers (640 kDa, Complex from Thermotoga maritima MSB8)
TmHydABC- T. maritima hydrogenase with bridge closed
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7p8n
Q-score: 0.607
Furlan C, Chongdar N, Gupta P, Lubitz W, Ogata H, Blaza JN, Birrell JA
eLife (2022) 11 [ Pubmed: 36018003 DOI: doi:10.7554/eLife.79361 ]
- Fe-hydrogenase, subunit gamma (20 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
- Fe-hydrogenase, subunit alpha (72 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
- Iron/sulfur cluster (351 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Flavin mononucleotide (456 Da, Ligand)
- Dimer of tmhydabc protomers forming a "closed bridge" between hyda and hydb (640 kDa, Complex from Thermotoga maritima MSB8)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Fe-hydrogenase, subunit beta (68 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
- Water (18 Da, Ligand)
TmHydABC- T. maritima bifurcating hydrogenase with bridge domain closed
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7p91
Q-score: 0.604
Furlan C, Chongdar N, Gupta P, Lubitz W, Ogata H, Blaza JN, Birrell JA
eLife (2022) 11 [ Pubmed: 36018003 DOI: doi:10.7554/eLife.79361 ]
- Fe-hydrogenase, subunit gamma (20 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
- Fe-hydrogenase, subunit alpha (72 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
- Iron/sulfur cluster (351 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Flavin mononucleotide (456 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Fe-hydrogenase, subunit beta (68 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
- Water (18 Da, Ligand)
- Dimer of tmhydabc protomers in a bridge closed conformation (640 kDa, Complex from Thermotoga maritima MSB8)
TmHydABC- T. maritima bifurcating hydrogenase with bridge domain up
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7p92
Q-score: 0.607
Furlan C, Chongdar N, Gupta P, Lubitz W, Ogata H, Blaza JN, Birrell JA
eLife (2022) 11 [ Pubmed: 36018003 DOI: doi:10.7554/eLife.79361 ]
- Fe-hydrogenase, subunit gamma (20 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
- Fe-hydrogenase, subunit alpha (72 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
- Iron/sulfur cluster (351 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Flavin mononucleotide (456 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Fe-hydrogenase, subunit beta (68 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
- Water (18 Da, Ligand)
- Open bridge conformation tmhydabc bifurcating hydrogenase (640 kDa, Complex from Thermotoga maritima MSB8)